MolNFT v2 · #123836 · protein

Cryo-EM structure of a human cytoplasmic actomyosin complex at near-atomic resolution

5JLH: “Cryo-EM structure of a human cytoplasmic actomyosin complex at near-atomic resolution”. Electron microscopy at 3.9, 2 ligands (ADP, MG). MolNFT v2 #123836 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5JLH
Type: protein
Length: 3,884 residues
Chains: 11
Method: electron microscopy
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 3.9
Source: Dictyostelium discoideum; Homo sapiens
UniProt: P63261, Q7Z406, P05095
Ligands: ADP, MG

Structure

electron microscopy · resolution 3.9 · 3 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E	—	protein	374	—	P63261
F, G	—	protein	737	—	Q7Z406, P05095
H, I, J, K	—	protein	135	—	—

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · 5 copies · chains A, B, C, D, E
MG · Magnesium ion · metal · 5 copies · chains A, B, C, D, E

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5JLH · Cryo-EM structure of a human cytoplasmic actomyosin complex at near- atomic resolution · the same entry in another collection · chain K against K, TM-score 1.00
P63261 · AlphaFold monomer V2.0 prediction for actin, cytoplasmic 2 (P63261) · a predicted model of the same protein · chain E against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P63261
Every structure of UniProt Q7Z406
Every structure of UniProt P05095
Elsewhere: RCSB PDB 5JLH · PDBe 5JLH · UniProt P63261 · UniProt Q7Z406 · UniProt P05095

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