MolNFT v2 · #122862 · protein
Crystal structure of human Desmocollin-1 ectodomain
5IRY: “Crystal structure of human Desmocollin-1 ectodomain”. X-ray diffraction at 3.095, 4 ligands (MAN, NAG, BMA). MolNFT v2 #122862 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5IRY
- Type
- protein
- Length
- 1,078 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.095
- Source
- Homo sapiens
- UniProt
- Q08554
- Ligands
- MAN, NAG, BMA, CA
Structure
x-ray diffraction · resolution 3.095 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 539 | — | Q08554 |
Ligands and binding sites
- MAN · alpha-D-mannopyranose · sugar · 9 copies · chains A, B
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A
- BMA · beta-D-mannopyranose · sugar
- CA · Calcium ion · metal · 24 copies · chains A, B
- EDO · 1,2-ethanediol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q08554
- Elsewhere: RCSB PDB 5IRY · PDBe 5IRY · UniProt Q08554
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