MolNFT v2 · #122217 · protein
Crystal structure of LP_PLA2 in complex with novel inhibitor
5I8P: “Crystal structure of LP_PLA2 in complex with novel inhibitor”. X-ray diffraction at 2.37, 1 ligand (VQ7). MolNFT v2 #122217 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5I8P
- Type
- protein
- Length
- 735 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.37
- Source
- Homo sapiens
- UniProt
- Q13093
- Ligands
- VQ7
Structure
x-ray diffraction · resolution 2.37 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 369 | — | Q13093 |
| B | — | protein | 366 | — | Q13093 |
Ligands and binding sites
- VQ7 · 6-[1,1-bis(oxidanylidene)-1,4-thiazinan-4-yl]-4-[[4-[4-chloranyl-3-(trifluoromethyl)phenoxy]-3,5-bis(fluoranyl)phenyl]methoxy]-1-methyl-pyrimidin-2-one · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5I8P · Crystal structure of LP_PLA2 in complex with novel inhibitor · the same entry in another collection · chain A against A, TM-score 1.00
- Q13093 · AlphaFold monomer V2.0 prediction for platelet-activating factor acetylhydrolase (Q13093) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q13093
- Elsewhere: RCSB PDB 5I8P · PDBe 5I8P · UniProt Q13093
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