MolNFT v2 · #122118 · protein
X-ray crystal structure at 2.40A resolution of human mitochondrial branched chain aminotransferase (bcatm) complexed with a tetrahydronaphthalenyl compound and an internal aldimine linked plp cofactor.
5I5U: “X-ray crystal structure at 2.40A resolution of human mitochondrial branched chain aminotransferase (bcatm)…”. X-ray diffraction at 2.404, 3 ligands (PLP, 67Y, CL). MolNFT v2 #122118 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5I5U
- Type
- protein
- Length
- 723 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.404
- Source
- Homo sapiens
- UniProt
- O15382
- Ligands
- PLP, 67Y, CL
Structure
x-ray diffraction · resolution 2.404 · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 363 | — | O15382 |
| B | — | protein | 360 | — | O15382 |
Ligands and binding sites
- PLP · Pyridoxal-5'-phosphate · ligand · 2 copies · chains A, B
- 67Y · 2-hydroxy-N-[(1R)-1,2,3,4-tetrahydronaphthalen-1-yl]acetamide · ligand · 2 copies · chains A, B
- CL · Chloride ion · ion · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 7 copies · chains A, B
- GOL · Glycerol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5I5U · X-ray crystal structure at 2.40A resolution of human mitochondrial branched chain… · the same entry in another collection · chain A against A, TM-score 1.00
- O15382 · AlphaFold monomer V2.0 prediction for branched-chain-amino-acid aminotransferase… · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O15382
- Elsewhere: RCSB PDB 5I5U · PDBe 5I5U · UniProt O15382
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