MolNFT v2 · #119842 · protein
Crystal structure of the catalytic domain of human JARID1B in complex with Maybridge fragment 3,6-Dihydroxybenzonorbornane (N08776b) (ligand modelled based on PANDDA event map)
5FZ3: “Crystal structure of the catalytic domain of human JARID1B in complex with Maybridge fragment…”. X-ray diffraction at 2.5, 5 ligands (7SI, ZN, MN). MolNFT v2 #119842 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5FZ3
- Type
- protein
- Length
- 453 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.5
- Source
- HOMO SAPIENS
- UniProt
- Q9UGL1
- Ligands
- 7SI, ZN, MN, CL, PO4
Structure
x-ray diffraction · resolution 2.5 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 453 | — | Q9UGL1 |
Ligands and binding sites
- 7SI · (1R,4S)-1,2,3,4-tetrahydro-1,4-methanonaphthalene-5,8-diol · ligand · chains A
- ZN · Zinc ion · metal · 2 copies · chains A
- MN · Manganese (II) ion · metal · chains A
- CL · Chloride ion · ion · chains A
- PO4 · Phosphate ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 8 copies · chains A
- DMS · Dimethyl sulfoxide · additive · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5FZ3 · Crystal structure of the catalytic domain of human JARID1B in complex with maybridge… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9UGL1
- Elsewhere: RCSB PDB 5FZ3 · PDBe 5FZ3 · UniProt Q9UGL1
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