MolNFT v2 · #118398 · protein

GephE in complex with Mg(2+) - AMP

5ERS: “GephE in complex with Mg(2+) - AMP”. X-ray diffraction at 1.7, 3 ligands (AMP, MG, PO4). MolNFT v2 #118398 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5ERS
Type: protein
Length: 414 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.7
Source: Rattus norvegicus
UniProt: Q03555
Ligands: AMP, MG, PO4

Structure

x-ray diffraction · resolution 1.7 · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	414	—	Q03555

Ligands and binding sites

AMP · Adenosine monophosphate · ligand · chains A
MG · Magnesium ion · metal · chains A
PO4 · Phosphate ion · ion · chains A
ACT · Acetate ion · additive · 3 copies · chains A
MPD · (4S)-2-methyl-2,4-pentanediol · additive · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5ERS · Gephe in complex with MG(2+) - AMP · the same entry in another collection · chain A against A, TM-score 1.00
Q03555 · AlphaFold monomer V2.0 prediction for gephyrin (Q03555) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q03555
Elsewhere: RCSB PDB 5ERS · PDBe 5ERS · UniProt Q03555

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