MolNFT v2 · #117117 · protein
Engineered CBM X-2 L110F in complex with branched carbohydrate XXXG.
5DPN: “Engineered CBM X-2 L110F in complex with branched carbohydrate XXXG.”. X-ray diffraction, neutron diffraction at 1.6,1.606, 3 ligands (BGC, XYS, CA). MolNFT v2 #117117 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5DPN
- Type
- protein
- Length
- 166 residues
- Chains
- 1
- Method
- x-ray diffraction, neutron diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.6,1.606
- Source
- Rhodothermus marinus
- UniProt
- Q7WTN6
- Ligands
- BGC, XYS, CA
Structure
x-ray diffraction, neutron diffraction · resolution 1.6,1.606 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 166 | — | Q7WTN6 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · 4 copies · chains A
- XYS · alpha-D-xylopyranose · sugar · 3 copies · chains A
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5DPN · Engineered cbm X-2 L110F in complex with branched carbohydrate xxxg. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7WTN6
- Elsewhere: RCSB PDB 5DPN · PDBe 5DPN · UniProt Q7WTN6
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