MolNFT v2 · #117023 · protein
Structure of the extracellular domain of the CD40 in complex with 3H56-5 DAB
5DMJ: “Structure of the extracellular domain of the CD40 in complex with 3H56-5 DAB”. X-ray diffraction at 2.79, 1 ligand (K). MolNFT v2 #117023 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5DMJ
- Type
- protein
- Length
- 844 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.79
- Source
- Homo sapiens
- UniProt
- P25942
- Ligands
- K
Structure
x-ray diffraction · resolution 2.79 · 6 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 165 | — | P25942 |
| B | — | protein | 117 | — | — |
| D | — | protein | 167 | — | P25942 |
| E | — | protein | 116 | — | — |
| F | — | protein | 163 | — | P25942 |
| G | — | protein | 116 | — | — |
Ligands and binding sites
- K · Potassium ion · metal · 3 copies · chains A, D, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5DMJ · Structure of the extracellular domain of the CD40 in complex with 3H56-5 dab · the same entry in another collection · chain G against G, TM-score 1.00
- P25942 · AlphaFold monomer V2.0 prediction for tumor necrosis factor receptor superfamily member 5… · a predicted model of the same protein · chain A against A, TM-score 0.64
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P25942
- Elsewhere: RCSB PDB 5DMJ · PDBe 5DMJ · UniProt P25942
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