MolNFT v2 · #116942 · protein
Crystal structure analysis of Tryptophanyl-trna synthetase from Bacillus stearothermophilus in complex with indolmycin and Mg*ATP
5DK4: “Crystal structure analysis of Tryptophanyl-trna synthetase from Bacillus stearothermophilus in complex with…”. X-ray diffraction at 1.9, 3 ligands (ATP, 5BX, MG). MolNFT v2 #116942 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5DK4
- Type
- protein
- Length
- 328 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.9
- Source
- Geobacillus stearothermophilus
- UniProt
- P00953
- Ligands
- ATP, 5BX, MG
Structure
x-ray diffraction · resolution 1.9 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 328 | — | P00953 |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · chains A
- 5BX · (5S)-5-[(1R)-1-(1H-indol-3-yl)ethyl]-2-(methylamino)-1,3-oxazol-4(5H)-one · ligand · chains A
- MG · Magnesium ion · metal · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5DK4 · Crystal structure analysis of tryptophanyl-tRNA synthetase from bacillus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00953
- Elsewhere: RCSB PDB 5DK4 · PDBe 5DK4 · UniProt P00953
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