MolNFT v1 · #99789 · protein + RNA
Crystal structure of bacillus subtilis mazf in complex with RNA
4MDX · MRNA interferase endoa: “Crystal structure of bacillus subtilis mazf in complex with RNA”. X-ray diffraction, 2 ligands (NA, IOD), 1 pocket (best druggability 0.36). MolNFT v1 #99789 on GenesisL1: 3D structure, binding sites and…
- PDB
- 4MDX
- Type
- protein + RNA
- Length
- 239 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- MRNA interferase endoa; RNA, mRNA
- EC
- 3.1.-.-
- UniProt
- P96622
- Ligands
- NA, IOD
- Pockets
- 1 · best druggability 0.36
Structure
x-ray diffraction · 2 distinct chains · 23% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | MRNA interferase endoa (EC 3.1.-.-) | protein | 115 | 23% helix, 37% strand | P96622 |
| C | RNA, mRNA | rna | 9 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 90 | 0.36 | 0.75 | 24 | empty |
Interfaces
3 interfaces between chains.
- A–B · 1293 Ų buried · 28 hydrogen bonds · protein-protein
- B–C · 865 Ų buried · 28 hydrogen bonds · protein-nucleic
- A–C · 268 Ų buried · 2 hydrogen bonds · protein-nucleic
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P96622
- Elsewhere: RCSB PDB 4MDX · PDBe 4MDX · UniProt P96622
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