MolNFT v1 · #99674 · protein
Crystal structure of the periplasmic sialic acid binding protein from vibrio cholerea
4MAG: “Crystal structure of the periplasmic sialic acid binding protein from vibrio cholerea”. X-ray diffraction, 2 ligands (CO, SO4), 3 pockets (best druggability 0.63). MolNFT v1 #99674 on GenesisL1: 3D structure, binding sites and…
- PDB
- 4MAG
- Type
- protein
- Length
- 307 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sialic acid binding protein
- UniProt
- C3NPP8
- Ligands
- CO, SO4
- Pockets
- 3 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sialic acid binding protein | protein | 307 | 51% helix, 20% strand | C3NPP8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 425 | 0.63 | 0.77 | 56 | SO4 |
| 2 | 100 | 0.36 | 0.74 | 17 | empty |
| 3 | 73 | 0.28 | 0.72 | 15 | empty |
Compared structures
- 4MAG · Crystal structure of the Periplasmic Sialic Acid Binding Protein from Vibrio Cholerea · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C3NPP8
- Elsewhere: RCSB PDB 4MAG · PDBe 4MAG · UniProt C3NPP8
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