Research workbench
Crystal structure of the periplasmic sialic acid binding protein from vibrio cholerea
Analyse Crystal structure of the periplasmic sialic acid binding protein from vibrio… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4MAG
- Type
- protein
- Length
- 307 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sialic acid binding protein
- UniProt
- C3NPP8
- Ligands
- CO, SO4
- Pockets
- 3 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sialic acid binding protein | protein | 307 | 51% helix, 20% strand | C3NPP8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 425 | 0.63 | 0.77 | 56 | SO4 |
| 2 | 100 | 0.36 | 0.74 | 17 | empty |
| 3 | 73 | 0.28 | 0.72 | 15 | empty |
Compared structures
- 4MAG · Crystal structure of the Periplasmic Sialic Acid Binding Protein from Vibrio Cholerea · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C3NPP8
- Elsewhere: RCSB PDB 4MAG · PDBe 4MAG · UniProt C3NPP8
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