MolNFT v1 · #9949 · protein
The crystal structure for the N-terminal two domains of icam-1
1IC1 · Intercellular adhesion molecule-1: “The crystal structure for the N-terminal two domains of icam-1”. X-ray diffraction, 1 ligand (NAG). MolNFT v1 #9949 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1IC1
- Type
- protein
- Length
- 380 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Intercellular adhesion molecule-1
- UniProt
- P05362
- Ligands
- NAG
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Intercellular adhesion molecule-1 | protein | 190 | 3% helix, 54% strand | P05362 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 11 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 8 glycan, 6 disulfide (N-glycosylation, disulfide).
Compared structures
- 1IC1 · The crystal structure for the N-terminal two domains of icam-1 · the same entry in another collection · chain A against A, TM-score 1.00
- P05362 · AlphaFold monomer V2.0 prediction for intercellular adhesion molecule 1 (P05362) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P05362
- Elsewhere: RCSB PDB 1IC1 · PDBe 1IC1 · UniProt P05362
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