GL1X · GenesisL1 explorer

MolNFT v1 · #99131 · protein

Complex of ovine serum albumin with 3,5-diiodosalicylic acid

4LUH: “Complex of ovine serum albumin with 3,5-diiodosalicylic acid”. X-ray diffraction, 3 ligands (DIU, LMR, 2Q5), 8 pockets (best druggability 0.79). MolNFT v1 #99131 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
4LUH
Type
protein
Length
583 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Serum albumin
UniProt
P14639
Ligands
DIU, LMR, 2Q5
Pockets
8 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 76% helix, 0% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ASerum albuminprotein58376% helix, 0% strandP14639

Ligands and binding sites

  • DIU · 2-hydroxy-3,5-diiodo-benzoic acid · ligand · 2 copies · chains A
  • LMR · (2S)-2-hydroxybutanedioic acid · ligand · 2 copies · chains A
  • 2Q5 · (2R)-2-{[(2R)-2-{[(2S)-2-{[(2R)-2-hydroxypropyl]oxy}propyl]oxy}propyl]oxy}propan-1-ol · ligand · 2 copies · chains A
  • SIN · Succinic acid · additive · 3 copies · chains A
  • ACT · Acetate ion · additive · 3 copies · chains A
  • MLI · Malonate ion · additive · 2 copies · chains A
  • FMT · Formic acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

8 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
19970.790.8170SIN, ACT, LMR
25190.770.8447DIU
31020.710.9320SIN, FMT
42000.610.82212Q5
5520.610.9215ACT

Modifications

Observed in the structure: 17 disulfide (disulfide).

Compared structures

  • 4LUH · Complex of ovine serum albumin with 3,5-diiodosalicylic acid · the same entry in another collection · chain A against A, TM-score 1.00
  • P14639 · AlphaFold monomer V2.0 prediction for albumin (P14639) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

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