MolNFT v1 · #98988 · protein

Crystal structure of mutant ribosomal protein L1 from methanococcus jannaschii with deletion of 8 residues from C-terminus

4LQ4 · 50S ribosomal protein L1: “Crystal structure of mutant ribosomal protein L1 from methanococcus jannaschii with deletion of 8 residues…”. X-ray diffraction, 1 ligand (CL), 1 pocket (best druggability 0.35). MolNFT v1 #98988 on…

PDB: 4LQ4
Type: protein
Length: 211 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 50S ribosomal protein L1
UniProt: P54050
Ligands: CL
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	50S ribosomal protein L1	protein	211	43% helix, 24% strand	P54050

Ligands and binding sites

CL · Chloride ion · ion · 3 copies · chains A
TLA · L(+)-tartaric acid · additive · chains A
IPA · Isopropyl alcohol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	112	0.35	0.73	19	empty

Compared structures

4LQ4 · crystal structure of mutant ribosomal protein L1 from Methanococcus jannaschii with… · the same entry in another collection · chain A against A, TM-score 1.00
P54050 · AlphaFold monomer V2.0 prediction for 50S ribosomal protein L1 (P54050) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P54050
Elsewhere: RCSB PDB 4LQ4 · PDBe 4LQ4 · UniProt P54050

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.