MolNFT v1 · #98933 · protein

Human P53 core domain mutant N239Y

4LOE · Cellular tumor antigen P53: “Human P53 core domain mutant N239Y”. X-ray diffraction, 1 ligand (ZN), 9 pockets (best druggability 0.55). MolNFT v1 #98933 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4LOE
Type: protein
Length: 776 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cellular tumor antigen P53
UniProt: P04637
Ligands: ZN
Pockets: 9 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D	Cellular tumor antigen P53	protein	194	9% helix, 34% strand	P04637

Ligands and binding sites

ZN · Zinc ion · metal · 4 copies · chains A, B, C, D

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

9 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	265	0.55	0.77	38	empty
2	112	0.42	0.77	24	empty
3	109	0.41	0.76	19	empty
4	125	0.40	0.75	19	empty
5	106	0.38	0.75	21	empty

Interfaces

2 interfaces between chains.

B–D · 512 Å² buried · 5 hydrogen bonds · protein-protein
A–C · 305 Å² buried · 2 hydrogen bonds · protein-protein

Compared structures

4LOE · Human p53 Core Domain Mutant N239Y · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P04637
Elsewhere: RCSB PDB 4LOE · PDBe 4LOE · UniProt P04637

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