MolNFT v1 · #98410 · protein
Crystal structure of canavalia grandiflora seed lectin complexed with X-man.
4L8Q: “Crystal structure of canavalia grandiflora seed lectin complexed with X-man.”. X-ray diffraction, 5 ligands (XMM, CD, CA). MolNFT v1 #98410 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4L8Q
- Type
- protein
- Length
- 233 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Canavalia grandiflora seed lectin
- Ligands
- XMM, CD, CA, MN, SO4
Structure
x-ray diffraction · 1 distinct chain · 3% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Canavalia grandiflora seed lectin | protein | 233 | 3% helix, 45% strand | — |
Ligands and binding sites
- XMM · 5-bromo-4-chloro-1H-indol-3-yl alpha-D-mannopyranoside · ligand · chains A
- CD · Cadmium ion · metal · 2 copies · chains A
- CA · Calcium ion · metal · chains A
- MN · Manganese (II) ion · metal · chains A
- SO4 · Sulfate ion · ion · chains A
- GOL · Glycerol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 4L8Q · Crystal structure of Canavalia grandiflora seed lectin complexed with X-Man. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4L8Q · PDBe 4L8Q
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.