MolNFT v1 · #98290 · protein
Crystal structures of the lsrr proteins complexed with phospho-ai-2 and its two different analogs reveal distinct mechanisms for ligand recognition
4L51 · Transcriptional regulator lsrr: “Crystal structures of the lsrr proteins complexed with phospho-ai-2 and its two different analogs reveal…”. X-ray diffraction, 1 ligand (HSX), 4 pockets (best druggability 0.60). MolNFT v1 #98290 on…
- PDB
- 4L51
- Type
- protein
- Length
- 494 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Transcriptional regulator lsrr
- UniProt
- P76141
- Ligands
- HSX
- Pockets
- 4 · best druggability 0.60
Structure
x-ray diffraction · 2 distinct chains · 48% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Transcriptional regulator lsrr | protein | 246 | 49% helix, 17% strand | P76141 |
| B | Transcriptional regulator lsrr | protein | 248 | 48% helix, 17% strand | P76141 |
Ligands and binding sites
- HSX · 5-O-phosphono-alpha-D-ribofuranose · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 160 | 0.60 | 0.83 | 29 | HSX |
| 2 | 153 | 0.58 | 0.83 | 29 | HSX |
| 3 | 215 | 0.50 | 0.76 | 40 | empty |
| 4 | 130 | 0.39 | 0.74 | 31 | empty |
Interfaces
1 interface between chains.
- A–B · 793 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 4L51 · Crystal structures of the LsrR proteins complexed with phospho-AI-2 and its two different… · the same entry in another collection · chain A against A, TM-score 1.00
- P76141 · AlphaFold monomer V2.0 prediction for transcriptional regulator lsrr (P76141) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P76141
- Elsewhere: RCSB PDB 4L51 · PDBe 4L51 · UniProt P76141
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