MolNFT v1 · #98248 · protein
Crystal structure of glucokinase-activator complex
4L3Q: “Crystal structure of glucokinase-activator complex”. X-ray diffraction, 2 ligands (926, GLC), 4 pockets (best druggability 0.62). MolNFT v1 #98248 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4L3Q
- Type
- protein
- Length
- 447 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glucokinase
- EC
- 2.7.1.2
- UniProt
- P35557
- Ligands
- 926, GLC
- Pockets
- 4 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glucokinase (EC 2.7.1.2) | protein | 447 | 40% helix, 21% strand | P35557 |
Ligands and binding sites
- 926 · 6-{3-[(1-methyl-1H-imidazol-2-yl)sulfanyl]phenyl}pyridin-2(1H)-one · ligand · chains A
- GLC · alpha-D-glucopyranose · sugar · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 282 | 0.62 | 0.81 | 37 | GLC |
| 2 | 214 | 0.62 | 0.82 | 32 | 926 |
| 3 | 166 | 0.44 | 0.75 | 33 | empty |
| 4 | 59 | 0.30 | 0.75 | 13 | empty |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P35557
- Elsewhere: RCSB PDB 4L3Q · PDBe 4L3Q · UniProt P35557
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