MolNFT v1 · #98095 · protein
Structure of PI3K gamma with imidazopyridine inhibitors
4KZ0 · Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic…: “Structure of PI3K gamma with imidazopyridine inhibitors”. X-ray diffraction, 2 ligands (1UJ, SO4), 14 pockets (best druggability 0.82). MolNFT v1 #98095 on GenesisL1: 3D…
- PDB
- 4KZ0
- Type
- protein
- Length
- 833 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform
- EC
- 2.7.1.153, 2.7.11.1
- UniProt
- P48736
- Ligands
- 1UJ, SO4
- Pockets
- 14 · best druggability 0.82
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform (EC 2.7.1.153, 2.7.11.1) | protein | 833 | 45% helix, 17% strand | P48736 |
Ligands and binding sites
- 1UJ · methyl 2-(acetylamino)-1,3-benzothiazole-6-carboxylate · ligand · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
14 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1004 | 0.82 | 0.83 | 74 | SO4 |
| 2 | 113 | 0.79 | 0.97 | 34 | empty |
| 3 | 267 | 0.68 | 0.83 | 39 | 1UJ |
| 4 | 386 | 0.64 | 0.78 | 47 | empty |
| 5 | 144 | 0.56 | 0.82 | 24 | empty |
Compared structures
- 4KZ0 · Structure of PI3K gamma with Imidazopyridine inhibitors · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P48736
- Elsewhere: RCSB PDB 4KZ0 · PDBe 4KZ0 · UniProt P48736
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