MolNFT v1 · #96903 · protein
Crystal structure of ribosomal RNA small subunit methyltransferase a from rickettsia bellii determined by iodide sad phasing
4JXJ: “Crystal structure of ribosomal RNA small subunit methyltransferase a from rickettsia bellii determined by…”. X-ray diffraction, 1 ligand (IOD), 1 pocket (best druggability 0.56). MolNFT v1 #96903 on GenesisL1: 3D structure, binding…
- PDB
- 4JXJ
- Type
- protein
- Length
- 246 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ribosomal RNA small subunit methyltransferase a
- EC
- 2.1.1.182
- UniProt
- Q1RK29
- Ligands
- IOD
- Pockets
- 1 · best druggability 0.56
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ribosomal RNA small subunit methyltransferase a (EC 2.1.1.182) | protein | 246 | 43% helix, 21% strand | Q1RK29 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 196 | 0.56 | 0.80 | 36 | IOD |
Compared structures
- 4JXJ · Crystal Structure of Ribosomal RNA small subunit methyltransferase A from Rickettsia… · the same entry in another collection · chain A against A, TM-score 1.00
- Q1RK29 · AlphaFold monomer V2.0 prediction for ribosomal RNA small subunit methyltransferase a… · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1RK29
- Elsewhere: RCSB PDB 4JXJ · PDBe 4JXJ · UniProt Q1RK29
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