MolNFT v1 · #96778 · protein

Structure of the N0 domain of the type II secretin from enterotoxigenic escherichia COLI

4JTM · Type II secretion system protein D: “Structure of the N0 domain of the type II secretin from enterotoxigenic escherichia COLI”. X-ray diffraction, 1 pocket (best druggability 0.32). MolNFT v1 #96778 on GenesisL1: 3D structure…

PDB: 4JTM
Type: protein
Length: 162 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Type II secretion system protein D
UniProt: E3PJ86
Pockets: 1 · best druggability 0.32

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Type II secretion system protein D	protein	81	33% helix, 36% strand	E3PJ86

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	56	0.32	0.76	11	empty

Interfaces

1 interface between chains.

A–B · 677 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

4JTM · Structure of the N0 domain of the type II secretin from enterotoxigenic Escherichia coli · the same entry in another collection · chain A against A, TM-score 1.00
E3PJ86 · AlphaFold monomer V2.0 prediction for secretin gspd 2 (E3PJ86) · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt E3PJ86
Elsewhere: RCSB PDB 4JTM · PDBe 4JTM · UniProt E3PJ86

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.