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Structure of the N0 domain of the type II secretin from enterotoxigenic escherichia COLI

Analyse Structure of the N0 domain of the type II secretin from enterotoxigenic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 4JTM
Type: protein
Length: 162 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Type II secretion system protein D
UniProt: E3PJ86
Pockets: 1 · best druggability 0.32

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Type II secretion system protein D	protein	81	33% helix, 36% strand	E3PJ86

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	56	0.32	0.76	11	empty

Interfaces

1 interface between chains.

A–B · 677 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

4JTM · Structure of the N0 domain of the type II secretin from enterotoxigenic Escherichia coli · the same entry in another collection · chain A against A, TM-score 1.00
E3PJ86 · AlphaFold monomer V2.0 prediction for secretin gspd 2 (E3PJ86) · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt E3PJ86
Elsewhere: RCSB PDB 4JTM · PDBe 4JTM · UniProt E3PJ86

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