MolNFT v1 · #96746 · protein
The X-ray crystal structure of a thermophilic cellobiose binding protein bound with laminaripentaose
4JSO · Oligopeptide ABC transporter, periplasmic oligopeptide…: “The X-ray crystal structure of a thermophilic cellobiose binding protein bound with laminaripentaose”. X-ray diffraction, 2 ligands (BGC, CA), 3 pockets (best druggability…
- PDB
- 4JSO
- Type
- protein
- Length
- 582 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Oligopeptide ABC transporter, periplasmic oligopeptide- binding protein
- UniProt
- Q9WXN8
- Ligands
- BGC, CA
- Pockets
- 3 · best druggability 0.87
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Oligopeptide ABC transporter, periplasmic oligopeptide- binding protein | protein | 582 | 32% helix, 19% strand | Q9WXN8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 981 | 0.87 | 0.88 | 82 | BGC, CA |
| 2 | 121 | 0.41 | 0.75 | 22 | empty |
| 3 | 50 | 0.26 | 0.74 | 14 | empty |
Compared structures
- 4JSO · The X-ray crystal structure of a thermophilic cellobiose binding protein bound with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WXN8
- Elsewhere: RCSB PDB 4JSO · PDBe 4JSO · UniProt Q9WXN8
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