MolNFT v1 · #96440 · protein

Crystal structure of USP7-ntd with an E2 enzyme

4JJQ · Ubiquitin carboxyl-terminal hydrolase 7: “Crystal structure of USP7-ntd with an E2 enzyme”. X-ray diffraction. MolNFT v1 #96440 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4JJQ
Type: protein
Length: 141 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ubiquitin carboxyl-terminal hydrolase 7; Ubiquitin-conjugating enzyme E2 E1
EC: 3.4.19.12, 6.3.2.19
UniProt: Q93009, P51965

Structure

x-ray diffraction · 2 distinct chains · 7% helix, 53% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ubiquitin carboxyl-terminal hydrolase 7 (EC 3.4.19.12)	protein	137	7% helix, 54% strand	Q93009
B	Ubiquitin-conjugating enzyme E2 E1 (EC 6.3.2.19)	protein	4	0% helix, 25% strand	P51965

Interfaces

1 interface between chains.

A–B · 284 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

4JJQ · Crystal structure of usp7-ntd with an e2 enzyme · the same entry in another collection · chain A against A, TM-score 1.00
P51965 · AlphaFold monomer V2.0 prediction for ubiquitin-conjugating enzyme E2 E1 (P51965) · a predicted model of the same protein · chain B against A, TM-score 0.89

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q93009
Every structure of UniProt P51965
Elsewhere: RCSB PDB 4JJQ · PDBe 4JJQ · UniProt Q93009 · UniProt P51965

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