MolNFT v1 · #9575 · DNA
0.6 a structure of Z-DNA cgcgcg
1I0T · 5'-D(*CP*GP*CP*GP*CP*G)-3': “0.6 a structure of Z-DNA cgcgcg”. X-ray diffraction, 1 ligand (SPM). MolNFT v1 #9575 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1I0T
- Type
- DNA
- Length
- 12 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*CP*GP*CP*GP*CP*G)-3'
- Ligands
- SPM
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 5'-D(*CP*GP*CP*GP*CP*G)-3' | dna | 6 | — | — |
Ligands and binding sites
- SPM · Spermine · ligand · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 325 Ų buried · 21 hydrogen bonds · nucleic-nucleic
Compared structures
- 1I0T · 0.6 a structure of Z-DNA cgcgcg · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1I0T · PDBe 1I0T
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.