MolNFT v1 · #95708 · protein
Macrolepiota procera ricin B-like lectin (mpl) in complex with galactose
4IYB: “Macrolepiota procera ricin B-like lectin (mpl) in complex with galactose”. X-ray diffraction, 1 ligand (GAL), 1 pocket (best druggability 0.51). MolNFT v1 #95708 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4IYB
- Type
- protein
- Length
- 280 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ricin B-like lectin
- UniProt
- F6KMV5
- Ligands
- GAL
- Pockets
- 1 · best druggability 0.51
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Ricin B-like lectin | protein | 140 | 7% helix, 42% strand | F6KMV5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 210 | 0.51 | 0.76 | 37 | GAL |
Interfaces
1 interface between chains.
- A–B · 354 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 4IYB · Macrolepiota procera ricin B-like lectin (MPL) in complex with galactose · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F6KMV5
- Elsewhere: RCSB PDB 4IYB · PDBe 4IYB · UniProt F6KMV5
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