MolNFT v1 · #95005 · protein
Crystal structure of the large terminase subunit GP2 of bacterial virus SF6
4IDH · Gene 2 protein: “Crystal structure of the large terminase subunit GP2 of bacterial virus SF6”. X-ray diffraction, 5 pockets (best druggability 0.55). MolNFT v1 #95005 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4IDH
- Type
- protein
- Length
- 451 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gene 2 protein
- UniProt
- Q716H3
- Pockets
- 5 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gene 2 protein | protein | 451 | 41% helix, 19% strand | Q716H3 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 330 | 0.55 | 0.75 | 43 | empty |
| 2 | 273 | 0.52 | 0.75 | 37 | empty |
| 3 | 173 | 0.52 | 0.78 | 28 | empty |
| 4 | 176 | 0.44 | 0.74 | 21 | empty |
| 5 | 85 | 0.36 | 0.76 | 17 | empty |
Compared structures
- 4IDH · Crystal Structure of the large terminase subunit gp2 of bacterial virus Sf6 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q716H3
- Elsewhere: RCSB PDB 4IDH · PDBe 4IDH · UniProt Q716H3
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