Research workbench
Crystal structure of the large terminase subunit GP2 of bacterial virus SF6
Analyse Crystal structure of the large terminase subunit GP2 of bacterial virus SF6 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4IDH
- Type
- protein
- Length
- 451 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gene 2 protein
- UniProt
- Q716H3
- Pockets
- 5 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gene 2 protein | protein | 451 | 41% helix, 19% strand | Q716H3 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 330 | 0.55 | 0.75 | 43 | empty |
| 2 | 273 | 0.52 | 0.75 | 37 | empty |
| 3 | 173 | 0.52 | 0.78 | 28 | empty |
| 4 | 176 | 0.44 | 0.74 | 21 | empty |
| 5 | 85 | 0.36 | 0.76 | 17 | empty |
Compared structures
- 4IDH · Crystal Structure of the large terminase subunit gp2 of bacterial virus Sf6 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q716H3
- Elsewhere: RCSB PDB 4IDH · PDBe 4IDH · UniProt Q716H3
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