MolNFT v1 · #93550 · protein
HSC70 nbd with na, cl and glycerol
4H5R · Heat shock cognate 71 kda protein: “HSC70 nbd with na, cl and glycerol”. X-ray diffraction, 4 ligands (NA, PO4, SO4), 8 pockets (best druggability 0.81). MolNFT v1 #93550 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4H5R
- Type
- protein
- Length
- 764 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Heat shock cognate 71 kda protein
- UniProt
- P11142
- Ligands
- NA, PO4, SO4, CL
- Pockets
- 8 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Heat shock cognate 71 kda protein | protein | 382 | 41% helix, 28% strand | P11142 |
Ligands and binding sites
- NA · Sodium ion · metal · 2 copies · chains A, B
- PO4 · Phosphate ion · ion · 7 copies · chains A, B
- SO4 · Sulfate ion · ion · 3 copies · chains A, B
- CL · Chloride ion · ion · 2 copies · chains A, B
- GOL · Glycerol · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1190 | 0.81 | 0.82 | 90 | GOL |
| 2 | 84 | 0.73 | 0.96 | 23 | NA, PO4, CL |
| 3 | 80 | 0.73 | 0.97 | 24 | NA, PO4, CL |
| 4 | 336 | 0.58 | 0.76 | 32 | empty |
| 5 | 279 | 0.56 | 0.77 | 30 | empty |
Interfaces
1 interface between chains.
- A–B · 1193 Ų buried · 22 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P11142
- Elsewhere: RCSB PDB 4H5R · PDBe 4H5R · UniProt P11142
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