MolNFT v1 · #93297 · protein
Crystal structure of medicago truncatula nodulin 13 (MTN13) in complex with N6-isopentenyladenine (2IP)
4GY9 · MTN13 protein: “Crystal structure of medicago truncatula nodulin 13 (MTN13) in complex with N6-isopentenyladenine (2IP)”. X-ray diffraction, 2 ligands (ZIP, NA), 1 pocket (best druggability 0.63). MolNFT v1 #93297 on GenesisL1: 3D…
- PDB
- 4GY9
- Type
- protein
- Length
- 163 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- MTN13 protein
- UniProt
- P93330
- Ligands
- ZIP, NA
- Pockets
- 1 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | MTN13 protein | protein | 163 | 26% helix, 40% strand | P93330 |
Ligands and binding sites
- ZIP · N-(3-methylbut-2-en-1-yl)-9H-purin-6-amine · ligand · chains A
- NA · Sodium ion · metal · 6 copies · chains A
- MLI · Malonate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 255 | 0.63 | 0.81 | 23 | ZIP |
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P93330
- Elsewhere: RCSB PDB 4GY9 · PDBe 4GY9 · UniProt P93330
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