MolNFT v1 · #93275 · protein
The crystal structure of galectin-8 C-crd in complex with NDP52
4GXL: “The crystal structure of galectin-8 C-crd in complex with NDP52”. X-ray diffraction. MolNFT v1 #93275 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4GXL
- Type
- protein
- Length
- 154 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Galectin-8; Peptide from calcium-binding and coiled-coil domain- containing protein 2
- UniProt
- O00214, Q13137
Structure
x-ray diffraction · 2 distinct chains · 2% helix, 49% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Galectin-8 | protein | 143 | 2% helix, 52% strand | O00214 |
| B | Peptide from calcium-binding and coiled-coil domain- containing protein 2 | protein | 11 | 0% helix, 0% strand | Q13137 |
Ligands and binding sites
- GOL · Glycerol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 520 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 4GXL · The crystal structure of Galectin-8 C-CRD in complex with NDP52 · the same entry in another collection · chain A against A, TM-score 1.00
- O00214 · AlphaFold monomer V2.0 prediction for galectin-8 (O00214) · a predicted model of the same protein · chain A against A, TM-score 0.95
- Q13137 · AlphaFold monomer V2.0 prediction for calcium-binding and coiled-coil domain-containing… · a predicted model of the same protein · chain B against A, TM-score 0.33
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O00214
- Every structure of UniProt Q13137
- Elsewhere: RCSB PDB 4GXL · PDBe 4GXL · UniProt O00214 · UniProt Q13137
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