MolNFT v1 · #92635 · protein

N-terminal domain of vdup-1

4GEI · Thioredoxin-interacting protein: “N-terminal domain of vdup-1”. X-ray diffraction, 1 pocket (best druggability 0.40). MolNFT v1 #92635 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4GEI
Type: protein
Length: 144 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Thioredoxin-interacting protein
UniProt: Q9H3M7
Pockets: 1 · best druggability 0.40

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 61% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Thioredoxin-interacting protein	protein	144	0% helix, 61% strand	Q9H3M7

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	54	0.40	0.81	17	empty

Compared structures

4GEI · N-terminal domain of VDUP-1 · the same entry in another collection · chain A against A, TM-score 1.00
Q9H3M7 · AlphaFold monomer V2.0 prediction for thioredoxin-interacting protein (Q9H3M7) · a predicted model of the same protein · chain A against A, TM-score 0.85

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9H3M7
Elsewhere: RCSB PDB 4GEI · PDBe 4GEI · UniProt Q9H3M7

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