MolNFT v1 · #92282 · protein
Crystal structure of a salmonella type III secretion system protein
4G2S · Protein prgh: “Crystal structure of a salmonella type III secretion system protein”. X-ray diffraction, 1 ligand (CA), 15 pockets (best druggability 0.54). MolNFT v1 #92282 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 4G2S
- Type
- protein
- Length
- 636 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein prgh
- UniProt
- P41783
- Ligands
- CA
- Pockets
- 15 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 7% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | Protein prgh | protein | 106 | 7% helix, 46% strand | P41783 |
Ligands and binding sites
- CA · Calcium ion · metal · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
15 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 280 | 0.54 | 0.76 | 48 | empty |
| 2 | 221 | 0.50 | 0.76 | 39 | empty |
| 3 | 177 | 0.48 | 0.76 | 30 | empty |
| 4 | 191 | 0.48 | 0.76 | 26 | empty |
| 5 | 171 | 0.47 | 0.76 | 32 | empty |
Interfaces
6 interfaces between chains.
- E–F · 680 Ų buried · 9 hydrogen bonds · protein-protein
- B–C · 674 Ų buried · 12 hydrogen bonds · protein-protein
- A–F · 666 Ų buried · 11 hydrogen bonds · protein-protein
- C–D · 654 Ų buried · 11 hydrogen bonds · protein-protein
- A–B · 649 Ų buried · 8 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P41783
- Elsewhere: RCSB PDB 4G2S · PDBe 4G2S · UniProt P41783
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