MolNFT v1 · #91916 · protein
Crystal structure of BACE1 in complex with biarylspiro aminooxazoline 6
4FRI · Beta-secretase 1: “Crystal structure of BACE1 in complex with biarylspiro aminooxazoline 6”. X-ray diffraction, 2 ligands (DWA, IOD), 1 pocket (best druggability 0.73). MolNFT v1 #91916 on GenesisL1: 3D structure, binding sites and…
- PDB
- 4FRI
- Type
- protein
- Length
- 372 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-secretase 1
- EC
- 3.4.23.46
- UniProt
- P56817
- Ligands
- DWA, IOD
- Pockets
- 1 · best druggability 0.73
Structure
x-ray diffraction · 1 distinct chain · 16% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Beta-secretase 1 (EC 3.4.23.46) | protein | 372 | 16% helix, 41% strand | P56817 |
Ligands and binding sites
- DWA · (4R)-4-[3-(2-fluoropyridin-3-yl)phenyl]-4-(4-methoxyphenyl)-4,5-dihydro-1,3-oxazol-2-amine · ligand · chains A
- IOD · Iodide ion · ion · 3 copies · chains A
- DMS · Dimethyl sulfoxide · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 639 | 0.73 | 0.80 | 60 | DWA |
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P56817
- Elsewhere: RCSB PDB 4FRI · PDBe 4FRI · UniProt P56817
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