MolNFT v1 · #90836 · protein

Crystal structure hp-nap from strain YS29 cadmium loaded (cocrystallization 50MM)

4EVD · Neutrophil-activating protein: “Crystal structure hp-nap from strain YS29 cadmium loaded (cocrystallization 50MM)”. X-ray diffraction, 1 ligand (CD), 1 pocket (best druggability 0.47). MolNFT v1 #90836 on GenesisL1: 3D structure…

PDB: 4EVD
Type: protein
Length: 143 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Neutrophil-activating protein
UniProt: G1UIZ2
Ligands: CD
Pockets: 1 · best druggability 0.47

Structure

x-ray diffraction · 1 distinct chain · 79% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Neutrophil-activating protein	protein	143	79% helix, 3% strand	G1UIZ2

Ligands and binding sites

CD · Cadmium ion · metal · 16 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	110	0.47	0.79	18	CD

Compared structures

4EVD · Crystal Structure HP-NAP from strain YS29 cadmium loaded (Cocrystallization 50mM) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G1UIZ2
Elsewhere: RCSB PDB 4EVD · PDBe 4EVD · UniProt G1UIZ2

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