Research workbench
Crystal structure hp-nap from strain YS29 cadmium loaded (cocrystallization 50MM)
Analyse Crystal structure hp-nap from strain YS29 cadmium loaded (cocrystallization… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 4EVD
- Type
- protein
- Length
- 143 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Neutrophil-activating protein
- UniProt
- G1UIZ2
- Ligands
- CD
- Pockets
- 1 · best druggability 0.47
Structure
x-ray diffraction · 1 distinct chain · 79% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Neutrophil-activating protein | protein | 143 | 79% helix, 3% strand | G1UIZ2 |
Ligands and binding sites
- CD · Cadmium ion · metal · 16 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 110 | 0.47 | 0.79 | 18 | CD |
Compared structures
- 4EVD · Crystal Structure HP-NAP from strain YS29 cadmium loaded (Cocrystallization 50mM) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt G1UIZ2
- Elsewhere: RCSB PDB 4EVD · PDBe 4EVD · UniProt G1UIZ2
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