Decaplanin second P6122-form

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 14% strand (DSSP).

Ligands and binding sites

• ERE · 4-epi-vancosamine · ligand · 4 copies · chains A, C, D, B
• BGC · beta-D-glucopyranose · sugar · 4 copies · chains A, B, C, D
• RAM · alpha-L-rhamnopyranose · sugar · 4 copies · chains A, C, B, D
• CL · Chloride ion · ion · 4 copies · chains A, B, C, D
• PO4 · Phosphate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

3 interfaces between chains.

• A–B · 367 Ų buried · 4 hydrogen bonds · protein-protein
• C–D · 364 Ų buried · 5 hydrogen bonds · protein-protein
• A–C · 192 Ų buried · 9 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 24 modified, 4 covalent, 4 glycan (nonstandard, covalent ligand, glycosylation).

Compared structures

• 1HHF · Decaplanin second P6122-Form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

• Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
• Elsewhere: RCSB PDB 1HHF · PDBe 1HHF