MolNFT v1 · #89739 · protein
Crystal structure of NAD kinase 1 from listeria monocytogenes in complex with 2'-phosphate BIS(ADENOSINE)-5'-diphosphate
4DY6 · Inorganic POLYPHOSPHATE/ATP-NAD kinase 1: “Crystal structure of NAD kinase 1 from listeria monocytogenes in complex with 2'-phosphate…”. X-ray diffraction, 1 ligand (A22). MolNFT v1 #89739 on GenesisL1: 3D structure, binding sites…
- PDB
- 4DY6
- Type
- protein
- Length
- 258 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Inorganic POLYPHOSPHATE/ATP-NAD kinase 1
- EC
- 2.7.1.23
- UniProt
- Q8Y8D7
- Ligands
- A22
Structure
x-ray diffraction · 1 distinct chain · 23% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Inorganic POLYPHOSPHATE/ATP-NAD kinase 1 (EC 2.7.1.23) | protein | 258 | 23% helix, 42% strand | Q8Y8D7 |
Ligands and binding sites
- A22 · [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl [(2R,3R,4R,5R)-5-(6-amino-9H-purin-9-yl)-3-hydroxy-4-(phosphonooxy)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate · ligand · chains A
- CIT · Citric acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 4DY6 · Crystal structure of NAD kinase 1 from Listeria monocytogenes in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8Y8D7
- Elsewhere: RCSB PDB 4DY6 · PDBe 4DY6 · UniProt Q8Y8D7
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