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MolNFT v1 · #88612 · protein

DYNLL2 dynein light chain binds to an extended, unstructured linear motif of myosin 5A tail

4D07 · Dynein light chain 2, cytoplasmic: “DYNLL2 dynein light chain binds to an extended, unstructured linear motif of myosin 5A tail”. X-ray diffraction, 2 ligands (CO, SO4). MolNFT v1 #88612 on GenesisL1: 3D structure, binding sites and…

PDB
4D07
Type
protein
Length
104 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Dynein light chain 2, cytoplasmic; Myosin va variant
UniProt
Q96FJ2, Q59FF5
Ligands
CO, SO4

Structure

x-ray diffraction · 2 distinct chains · 32% helix, 37% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ADynein light chain 2, cytoplasmicprotein9236% helix, 36% strandQ96FJ2
BMyosin va variantprotein120% helix, 42% strandQ59FF5

Ligands and binding sites

  • CO · Cobalt (II) ion · metal · chains A
  • SO4 · Sulfate ion · ion · chains A
  • TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • A–B · 655 Ų buried · 19 hydrogen bonds · protein-protein

Compared structures

  • 4D07 · DYNLL2 dynein light chain binds to an extended, unstructured linear motif of myosin 5a… · the same entry in another collection · chain A against A, TM-score 1.00
  • Q96FJ2 · AlphaFold monomer V2.0 prediction for dynein light chain 2, cytoplasmic (Q96FJ2) · a predicted model of the same protein · chain A against A, TM-score 0.94

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