MolNFT v1 · #88612 · protein
DYNLL2 dynein light chain binds to an extended, unstructured linear motif of myosin 5A tail
4D07 · Dynein light chain 2, cytoplasmic: “DYNLL2 dynein light chain binds to an extended, unstructured linear motif of myosin 5A tail”. X-ray diffraction, 2 ligands (CO, SO4). MolNFT v1 #88612 on GenesisL1: 3D structure, binding sites and…
- PDB
- 4D07
- Type
- protein
- Length
- 104 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Dynein light chain 2, cytoplasmic; Myosin va variant
- UniProt
- Q96FJ2, Q59FF5
- Ligands
- CO, SO4
Structure
x-ray diffraction · 2 distinct chains · 32% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Dynein light chain 2, cytoplasmic | protein | 92 | 36% helix, 36% strand | Q96FJ2 |
| B | Myosin va variant | protein | 12 | 0% helix, 42% strand | Q59FF5 |
Ligands and binding sites
- CO · Cobalt (II) ion · metal · chains A
- SO4 · Sulfate ion · ion · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 655 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 4D07 · DYNLL2 dynein light chain binds to an extended, unstructured linear motif of myosin 5a… · the same entry in another collection · chain A against A, TM-score 1.00
- Q96FJ2 · AlphaFold monomer V2.0 prediction for dynein light chain 2, cytoplasmic (Q96FJ2) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96FJ2
- Every structure of UniProt Q59FF5
- Elsewhere: RCSB PDB 4D07 · PDBe 4D07 · UniProt Q96FJ2 · UniProt Q59FF5
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