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DYNLL2 dynein light chain binds to an extended, unstructured linear motif of myosin 5A tail

Analyse DYNLL2 dynein light chain binds to an extended, unstructured linear motif of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
4D07
Type
protein
Length
104 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Dynein light chain 2, cytoplasmic; Myosin va variant
UniProt
Q96FJ2, Q59FF5
Ligands
CO, SO4

Structure

x-ray diffraction · 2 distinct chains · 32% helix, 37% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ADynein light chain 2, cytoplasmicprotein9236% helix, 36% strandQ96FJ2
BMyosin va variantprotein120% helix, 42% strandQ59FF5

Ligands and binding sites

  • CO · Cobalt (II) ion · metal · chains A
  • SO4 · Sulfate ion · ion · chains A
  • TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

  • A–B · 655 Ų buried · 19 hydrogen bonds · protein-protein

Compared structures

  • 4D07 · DYNLL2 dynein light chain binds to an extended, unstructured linear motif of myosin 5a… · the same entry in another collection · chain A against A, TM-score 1.00
  • Q96FJ2 · AlphaFold monomer V2.0 prediction for dynein light chain 2, cytoplasmic (Q96FJ2) · a predicted model of the same protein · chain A against A, TM-score 0.94

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