MolNFT v1 · #88594 · protein
Crystal structure of the extralong fungal manganese peroxidase from ceriporiopsis subvermispora in complex with manganese (anomalous data)
4CZP · Extralong manganese peroxidase: “Crystal structure of the extralong fungal manganese peroxidase from ceriporiopsis subvermispora in complex…”. X-ray diffraction, 3 ligands (HEM, CA, MN), 3 pockets (best druggability 0.81). MolNFT v1…
- PDB
- 4CZP
- Type
- protein
- Length
- 367 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Extralong manganese peroxidase
- EC
- 1.11.1.13
- Ligands
- HEM, CA, MN
- Pockets
- 3 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 39% helix, 6% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Extralong manganese peroxidase (EC 1.11.1.13) | protein | 367 | 39% helix, 6% strand | — |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · chains A
- CA · Calcium ion · metal · 2 copies · chains A
- MN · Manganese (II) ion · metal · 2 copies · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 439 | 0.81 | 0.88 | 42 | MN, HEM |
| 2 | 146 | 0.48 | 0.78 | 34 | empty |
| 3 | 110 | 0.43 | 0.78 | 24 | empty |
Modifications
Observed in the structure: 5 disulfide (disulfide).
Compared structures
- 4CZP · Crystal structure of the extralong fungal manganese peroxidase from ceriporiopsis… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4CZP · PDBe 4CZP
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