MolNFT v1 · #88592 · protein

Crystal structure of the extralong fungal manganese peroxidase from ceriporiopsis subvermispora

4CZN · Extralong manganese peroxidase: “Crystal structure of the extralong fungal manganese peroxidase from ceriporiopsis subvermispora”. X-ray diffraction, 3 ligands (HEM, CA, NA), 2 pockets (best druggability 0.79). MolNFT v1 #88592 on…

PDB: 4CZN
Type: protein
Length: 366 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Extralong manganese peroxidase
EC: 1.11.1.13
Ligands: HEM, CA, NA
Pockets: 2 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 6% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Extralong manganese peroxidase (EC 1.11.1.13)	protein	366	40% helix, 6% strand	—

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A
CA · Calcium ion · metal · 2 copies · chains A
NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	516	0.79	0.86	66	NA, HEM
2	127	0.47	0.78	28	empty

Modifications

Observed in the structure: 5 disulfide (disulfide).

Compared structures

4CZN · Crystal structure of the extralong fungal manganese peroxidase from Ceriporiopsis… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 4CZN · PDBe 4CZN

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