MolNFT v1 · #88054 · protein

Burrh DNA-binding protein from burkholderia rhizoxinica in its apo form

4CJ9: “Burrh DNA-binding protein from burkholderia rhizoxinica in its apo form”. X-ray diffraction, 1 ligand (SE), 6 pockets (best druggability 0.61). MolNFT v1 #88054 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4CJ9
Type: protein
Length: 1,504 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Burrh
Ligands: SE
Pockets: 6 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 76% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Burrh	protein	752	76% helix, 0% strand	—

Ligands and binding sites

SE · Selenium atom · ion · 2 copies

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	381	0.61	0.77	40	empty
2	167	0.58	0.82	37	empty
3	105	0.58	0.86	26	empty
4	70	0.37	0.77	12	empty
5	88	0.36	0.75	12	empty

Interfaces

1 interface between chains.

A–B · 1093 Å² buried · 5 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 22 modified (engineered).

Compared structures

4CJ9 · BurrH DNA-binding protein from Burkholderia rhizoxinica in its apo form · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 4CJ9 · PDBe 4CJ9

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