MolNFT v1 · #88031 · protein

Plasminogen kringle 1 in complex with inhibitor

4CIK: “Plasminogen kringle 1 in complex with inhibitor”. X-ray diffraction, 1 ligand (XO3). MolNFT v1 #88031 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4CIK
Type: protein
Length: 81 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Plasminogen
EC: 3.4.21.7
UniProt: P00747
Ligands: XO3

Structure

x-ray diffraction · 1 distinct chain · 0% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Plasminogen (EC 3.4.21.7)	protein	81	0% helix, 16% strand	P00747

Ligands and binding sites

XO3 · 5-[(2R,4S)-2-(phenylmethyl)piperidin-4-yl]-1,2-oxazol-3-one · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

4CIK · plasminogen kringle 1 in complex with inhibitor · the same entry in another collection · chain A against A, TM-score 1.00
P00747 · AlphaFold monomer V2.0 prediction for plasminogen (P00747) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00747
Elsewhere: RCSB PDB 4CIK · PDBe 4CIK · UniProt P00747

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