MolNFT v1 · #86945 · protein

Crystal structure of fungal versatile peroxidase I from pleurotus ostreatus - crystal form VI

4BLZ: “Crystal structure of fungal versatile peroxidase I from pleurotus ostreatus - crystal form VI”. X-ray diffraction, 2 ligands (HEM, CA), 3 pockets (best druggability 0.82). MolNFT v1 #86945 on GenesisL1: 3D structure, binding sites…

PDB: 4BLZ
Type: protein
Length: 658 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Versatile peroxidase I
EC: 1.11.1.16
Ligands: HEM, CA
Pockets: 3 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 7% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Versatile peroxidase I (EC 1.11.1.16)	protein	329	41% helix, 7% strand	—

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
CA · Calcium ion · metal · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	479	0.82	0.88	45	HEM
2	468	0.81	0.88	47	HEM
3	444	0.72	0.82	57	empty

Interfaces

1 interface between chains.

A–B · 507 Å² buried · 5 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 disulfide (disulfide).

Compared structures

4BLZ · Crystal structure of fungal versatile peroxidase I from pleurotus ostreatus - crystal… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 4BLZ · PDBe 4BLZ

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