MolNFT v1 · #86852 · protein
Xyloglucan binding module (CBM4-2 X2-L110F) in complex with branched xyloses
4BJ0 · Xylanase: “Xyloglucan binding module (CBM4-2 X2-L110F) in complex with branched xyloses”. X-ray diffraction, 4 ligands (BGC, XYS, GLC), 1 pocket (best druggability 0.35). MolNFT v1 #86852 on GenesisL1: 3D structure, binding sites…
- PDB
- 4BJ0
- Type
- protein
- Length
- 166 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Xylanase
- EC
- 3.2.1.8
- UniProt
- Q6V8M0
- Ligands
- BGC, XYS, GLC, CA
- Pockets
- 1 · best druggability 0.35
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Xylanase (EC 3.2.1.8) | protein | 166 | 4% helix, 48% strand | Q6V8M0 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · 4 copies · chains A
- XYS · alpha-D-xylopyranose · sugar · 3 copies · chains A
- GLC · alpha-D-glucopyranose · sugar · chains A
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 76 | 0.35 | 0.76 | 14 | XYS |
Compared structures
- 4BJ0 · Xyloglucan binding module (CBM4-2 X2-L110F) in complex with branched xyloses · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6V8M0
- Elsewhere: RCSB PDB 4BJ0 · PDBe 4BJ0 · UniProt Q6V8M0
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