MolNFT v1 · #86774 · protein
Three dimensional structure of human gamma-butyrobetaine hydroxylase in complex with 3-carboxy-N-(2-fluoroethyl)-N,N-dimethylpropan-1- aminium chloride
4BGM · Gamma-butyrobetaine dioxygenase: “Three dimensional structure of human gamma-butyrobetaine hydroxylase in complex with…”. X-ray diffraction, 4 ligands (OGA, DLT, 16D), 2 pockets (best druggability 0.78). MolNFT v1 #86774 on…
- PDB
- 4BGM
- Type
- protein
- Length
- 384 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gamma-butyrobetaine dioxygenase
- EC
- 1.14.11.1
- UniProt
- O75936
- Ligands
- OGA, DLT, 16D, ZN
- Pockets
- 2 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 29% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Gamma-butyrobetaine dioxygenase (EC 1.14.11.1) | protein | 384 | 29% helix, 29% strand | O75936 |
Ligands and binding sites
- OGA · N-oxalylglycine · ligand · chains A
- DLT · 3-Carboxy-N-(2-fluoroethyl)-N,N-dimethylpropan-1-aminium · ligand · chains A
- 16D · Hexane-1,6-diamine · ligand · chains A
- ZN · Zinc ion · metal · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 173 | 0.78 | 0.94 | 38 | OGA, DLT, ZN |
| 2 | 164 | 0.44 | 0.74 | 17 | empty |
Compared structures
- 4BGM · Three dimensional structure of human gamma-butyrobetaine hydroxylase in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
- O75936 · AlphaFold monomer V2.0 prediction for gamma-butyrobetaine dioxygenase (O75936) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O75936
- Elsewhere: RCSB PDB 4BGM · PDBe 4BGM · UniProt O75936
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