MolNFT v1 · #86660 · protein
Fragment-based screening identifies a new area for inhibitor binding to checkpoint kinase 2 (CHK2)
4BDB · SERINE/THREONINE-protein kinase CHK2: “Fragment-based screening identifies a new area for inhibitor binding to checkpoint kinase 2 (CHK2)”. X-ray diffraction, 2 ligands (ODO, NO3), 3 pockets (best druggability 0.54). MolNFT v1…
- PDB
- 4BDB
- Type
- protein
- Length
- 283 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SERINE/THREONINE-protein kinase CHK2
- EC
- 2.7.11.1
- UniProt
- O96017
- Ligands
- ODO, NO3
- Pockets
- 3 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SERINE/THREONINE-protein kinase CHK2 (EC 2.7.11.1) | protein | 283 | 42% helix, 16% strand | O96017 |
Ligands and binding sites
- ODO · 4-[(E)-C-methyl-N-oxidanyl-carbonimidoyl]benzene-1,3-diol · ligand · chains A
- NO3 · Nitrate ion · ion · chains A
- EDO · 1,2-ethanediol · additive · 9 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 200 | 0.54 | 0.78 | 25 | ODO, EDO |
| 2 | 79 | 0.33 | 0.74 | 17 | empty |
| 3 | 56 | 0.28 | 0.74 | 9 | empty |
Compared structures
- 4BDB · Fragment-based screening identifies a new area for inhibitor binding to checkpoint kinase… · the same entry in another collection · chain A against A, TM-score 1.00
- O96017 · AlphaFold monomer V2.0 prediction for SERINE/THREONINE-protein kinase CHK2 (O96017) · a predicted model of the same protein · chain A against A, TM-score 0.85
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O96017
- Elsewhere: RCSB PDB 4BDB · PDBe 4BDB · UniProt O96017
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