MolNFT v1 · #86461 · protein
Factor inhibiting hif-1 alpha in complex with consensus ankyrin repeat domain-leu peptide (20-mer)
4B7E · Hypoxia-inducible factor 1-alpha inhibitor: “Factor inhibiting hif-1 alpha in complex with consensus ankyrin repeat domain-leu peptide (20-mer)”. X-ray diffraction, 3 ligands (OGA, ZN, SO4), 4 pockets (best druggability 0.50).…
- PDB
- 4B7E
- Type
- protein
- Length
- 366 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypoxia-inducible factor 1-alpha inhibitor; Consensus ankyrin repeat domain-leu
- EC
- 1.14.11.16, 1.14.11.30
- UniProt
- Q9NWT6
- Ligands
- OGA, ZN, SO4
- Pockets
- 4 · best druggability 0.50
Structure
x-ray diffraction · 2 distinct chains · 31% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypoxia-inducible factor 1-alpha inhibitor (EC 1.14.11.16, 1.14.11.30) | protein | 349 | 31% helix, 25% strand | Q9NWT6 |
| B | Consensus ankyrin repeat domain-leu | protein | 17 | 35% helix, 0% strand | — |
Ligands and binding sites
- OGA · N-oxalylglycine · ligand · chains A, B
- ZN · Zinc ion · metal · chains A, B
- SO4 · Sulfate ion · ion · 5 copies · chains A
- GOL · Glycerol · additive · 4 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 115 | 0.50 | 0.81 | 23 | empty |
| 2 | 103 | 0.47 | 0.80 | 25 | SO4 |
| 3 | 62 | 0.36 | 0.78 | 14 | empty |
| 4 | 51 | 0.29 | 0.76 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 1093 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 4B7E · Factor inhibiting hif-1 alpha in complex with consensus ankyrin repeat domain-leu peptide… · the same entry in another collection · chain A against A, TM-score 1.00
- Q9NWT6 · AlphaFold monomer V2.0 prediction for hypoxia-inducible factor 1-alpha inhibitor (Q9NWT6) · a predicted model of the same protein · chain A against A, TM-score 0.92
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9NWT6
- Elsewhere: RCSB PDB 4B7E · PDBe 4B7E · UniProt Q9NWT6
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